Xanthomonas oryzae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae; x__Xanthomonas oryzae X8-1A
NCBI Strain Identifiers X8-1A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004136375.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.56%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 875
N50 Contigs 9,713 bp
Longest Contig 40,042 bp
Scaffold Count 875
N50 Scaffolds 9,713 bp
Longest Scaffold 40,042 bp
Genome Size 4,594,862 bp
Protein Count 4,530
Coding Density 85.28%
GC Percentage 64.03%
Ambiguous Bases N/A
GTDB representative GCA_004136375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM21277v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469643
Country USA: Louisiana
Date 2011-05-09
Genbank Assembly Accession GCA_000212775.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,517
Refseq Category na
Seq Rel Date 2011/05/09
Spanned Gaps 0
Species Taxid 347
SSU Count 1
Submitter Colorado State University
Taxid 1009854
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFHL00000000.1