Treponema_F brennaborense
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Treponematales; f__Treponemataceae; g__Treponema_F; s__Treponema_F brennaborense
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema brennaborense
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema brennaborense; x__Treponema brennaborense DSM 12168
NCBI Strain Identifiers DSM 12168
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.7%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 1
N50 Contigs 3,055,580 bp
Longest Contig 3,055,580 bp
Scaffold Count 1
N50 Scaffolds 3,055,580 bp
Longest Scaffold 3,055,580 bp
Genome Size 3,055,580 bp
Protein Count 2,588
Coding Density 90.67%
GC Percentage 51.47%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM21241v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00713613
Country None
Date 2011-5-5
Genbank Assembly Accession GCA_000212415.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source skin from ulcerative lesion of bovine foot infected with digital dermatitis
Latitude Longitude None
Molecule Count 1
CDS Count 2,626
Refseq Category representative genome
Seq Rel Date 2011/05/05
Spanned Gaps 0
Species Taxid 81028
SSU Count 4
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 906968
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None