Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae GA17545
NCBI Strain Identifiers GA17545
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 11
N50 Contigs 256,489 bp
Longest Contig 800,839 bp
Scaffold Count 11
N50 Scaffolds 256,489 bp
Longest Scaffold 800,839 bp
Genome Size 2,103,456 bp
Protein Count 2,086
Coding Density 85.14%
GC Percentage 39.77%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM21187v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00792759
Country USA: Georgia
Date 2011-05-03
Genbank Assembly Accession GCA_000211875.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cerebrospinal fluid [ENVO:02000029]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,155
Refseq Category na
Seq Rel Date 2011/05/03
Spanned Gaps 0
Species Taxid 1313
SSU Count 8
Submitter Institute for Genome Sciences
Taxid 886289
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AFGA00000000.1