Pseudonocardia dioxanivorans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Pseudonocardiaceae; g__Pseudonocardia; s__Pseudonocardia dioxanivorans
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Pseudonocardia; s__Pseudonocardia dioxanivorans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Pseudonocardia; s__Pseudonocardia dioxanivorans; x__Pseudonocardia dioxanivorans CB1190
NCBI Strain Identifiers CB1190
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.73%
CheckM Contamination 1.42%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 3
N50 Contigs 7,096,571 bp
Longest Contig 7,096,571 bp
Scaffold Count 3
N50 Scaffolds 7,096,571 bp
Longest Scaffold 7,096,571 bp
Genome Size 7,303,989 bp
Protein Count 6,865
Coding Density 89.26%
GC Percentage 73.22%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM19667v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00713596
Country USA
Date 2011-3-28
Genbank Assembly Accession GCA_000196675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source industrial sludge contaminated with 1;4-dioxane
Latitude Longitude 34.299366 N 79.876714 W
Molecule Count 3
CDS Count 6,841
Refseq Category representative genome
Seq Rel Date 2011/03/28
Spanned Gaps 0
Species Taxid 240495
SSU Count 3
Submitter US DOE Joint Genome Institute
Taxid 675635
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None