Treponema_D succinifaciens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Treponematales; f__Treponemataceae; g__Treponema_D; s__Treponema_D succinifaciens
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema succinifaciens
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema succinifaciens; x__Treponema succinifaciens DSM 2489
NCBI Strain Identifiers DSM 2489
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.7%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 2
N50 Contigs 2,731,853 bp
Longest Contig 2,731,853 bp
Scaffold Count 2
N50 Scaffolds 2,731,853 bp
Longest Scaffold 2,731,853 bp
Genome Size 2,897,425 bp
Protein Count 2,753
Coding Density 89.87%
GC Percentage 39.13%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM19527v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00713601
Country None
Date 2011-4-7
Genbank Assembly Accession GCA_000195275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source colon
Latitude Longitude None
Molecule Count 2
CDS Count 2,727
Refseq Category representative genome
Seq Rel Date 2011/04/07
Spanned Gaps 0
Species Taxid 167
SSU Count 4
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 869209
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None