Lacticaseibacillus paracasei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paracasei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; x__Lactobacillus casei group; s__Lactobacillus paracasei
NCBI Strain Identifiers LC2W
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000829035.1)
Genome Characteristics
CheckM Completeness 99.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 2
N50 Contigs 3,039,042 bp
Longest Contig 3,039,042 bp
Scaffold Count 2
N50 Scaffolds 3,039,042 bp
Longest Scaffold 3,039,042 bp
Genome Size 3,077,434 bp
Protein Count 3,002
Coding Density 85.09%
GC Percentage 46.31%
Ambiguous Bases N/A
GTDB representative GCA_000829035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM19478v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02603877
Country China: Inner Mongolia
Date 2011-04-01
Genbank Assembly Accession GCA_000194785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source traditional dairy products
Latitude Longitude None
Molecule Count 2
CDS Count 3,168
Refseq Category na
Seq Rel Date 2011/04/01
Spanned Gaps 0
Species Taxid 1597
SSU Count 5
Submitter State Key Laboratory of Dairy Biotechnology, Technology Center of Bright Dairy & Food Co., Ltd,China
Taxid 1597
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None