Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. EC1212
NCBI Strain Identifiers A;EC1212
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 32
N50 Contigs 504,928 bp
Longest Contig 1,650,639 bp
Scaffold Count 32
N50 Scaffolds 504,928 bp
Longest Scaffold 1,650,639 bp
Genome Size 5,510,053 bp
Protein Count 5,302
Coding Density 87.28%
GC Percentage 50.42%
Ambiguous Bases 1
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM19395v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472078
Country None
Date 2011-01-27
Genbank Assembly Accession GCA_000193955.2
Genome Category Isolate
Genome Representation full
Isolate A
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,504
Refseq Category na
Seq Rel Date 2011/01/27
Spanned Gaps 0
Species Taxid 562
SSU Count 8
Submitter Virginia Bioinformatics Institute
Taxid 941435
Total Gap Length 0
Translation Table 11
tRNA Count (total) 103
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AERQ00000000.1