Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli E1520
NCBI Strain Identifiers E1520
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.79%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 28.57
5S Count 8
16S Count 3
23S Count 7
tRNA Count 19
Contig Count 127
N50 Contigs 95,420 bp
Longest Contig 259,655 bp
Scaffold Count 35
N50 Scaffolds 2,638,487 bp
Longest Scaffold 2,638,487 bp
Genome Size 4,932,139 bp
Protein Count 4,714
Coding Density 86.82%
GC Percentage 50.63%
Ambiguous Bases 5
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM19081v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02595401
Country None
Date 2011-3-3
Genbank Assembly Accession GCA_000190815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,078
Refseq Category na
Seq Rel Date 2011/03/03
Spanned Gaps 92
Species Taxid 562
SSU Count 8
Submitter Broad Institute
Taxid 656374
Total Gap Length 35258
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEHT00000000.1