Phocaeicola salanitronis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Phocaeicola; s__Phocaeicola salanitronis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides salanitronis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides salanitronis; x__Bacteroides salanitronis DSM 18170
NCBI Strain Identifiers DSM 18170
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.41%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 4
N50 Contigs 4,242,803 bp
Longest Contig 4,242,803 bp
Scaffold Count 4
N50 Scaffolds 4,242,803 bp
Longest Scaffold 4,242,803 bp
Genome Size 4,308,663 bp
Protein Count 3,782
Coding Density 87.73%
GC Percentage 46.49%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM19057v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00713589
Country Japan
Date 2011-2-28
Genbank Assembly Accession GCA_000190575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cecum
Latitude Longitude None
Molecule Count 4
CDS Count 3,707
Refseq Category representative genome
Seq Rel Date 2011/02/28
Spanned Gaps 0
Species Taxid 376805
SSU Count 6
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 667015
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None