Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O55:H7; x__Escherichia coli O55:H7 str. USDA 5905
NCBI Strain Identifiers USDA 5905
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 5
tRNA Count 19
Contig Count 154
N50 Contigs 145,709 bp
Longest Contig 341,547 bp
Scaffold Count 154
N50 Scaffolds 145,709 bp
Longest Scaffold 341,547 bp
Genome Size 5,105,283 bp
Protein Count 4,882
Coding Density 88.05%
GC Percentage 50.49%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM18736v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02952916
Country USA
Date 2011-01-31
Genbank Assembly Accession GCA_000187365.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,011
Refseq Category na
Seq Rel Date 2011/01/31
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter FDA
Taxid 926030
Total Gap Length 0
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEUB00000000.1