Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas savastanoi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas savastanoi; x__Pseudomonas savastanoi pv. glycinea; x__Pseudomonas savastanoi pv. glycinea str. race 4
NCBI Strain Identifiers race 4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 108
N50 Contigs 225,100 bp
Longest Contig 445,210 bp
Scaffold Count 108
N50 Scaffolds 225,100 bp
Longest Scaffold 445,210 bp
Genome Size 5,905,212 bp
Protein Count 5,494
Coding Density 87.53%
GC Percentage 57.96%
Ambiguous Bases 1
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM18706v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471825
Country None
Date 2011-01-28
Genbank Assembly Accession GCA_000187065.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,688
Refseq Category na
Seq Rel Date 2011/01/28
Spanned Gaps 0
Species Taxid 29438
SSU Count 4
Submitter University of Illinois at Urbana & Champaign
Taxid 875330
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AEGH00000000.1