Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Planctomycetota; c__Planctomycetes; o__Isosphaerales; f__Isosphaeraceae; g__Isosphaera; s__Isosphaera pallida
Filtered NCBI Taxonomy d__Bacteria; p__Planctomycetes; c__Planctomycetia; o__Planctomycetales; f__Isosphaeraceae; g__Isosphaera; s__Isosphaera pallida
Unfiltered NCBI Taxonomy d__Bacteria; x__PVC group; p__Planctomycetes; c__Planctomycetia; o__Planctomycetales; f__Isosphaeraceae; g__Isosphaera; s__Isosphaera pallida; x__Isosphaera pallida ATCC 43644
NCBI Strain Identifiers ATCC 43644
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.45%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 2
N50 Contigs 5,472,964 bp
Longest Contig 5,472,964 bp
Scaffold Count 2
N50 Scaffolds 5,472,964 bp
Longest Scaffold 5,472,964 bp
Genome Size 5,529,304 bp
Protein Count 3,792
Coding Density 84.66%
GC Percentage 62.49%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM18634v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00138929
Country USA: Oregon
Date 2011-1-20
Genbank Assembly Accession GCA_000186345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source algal mat from Kah-nee-tah hot spring
Latitude Longitude 44.86123 N 121.201439 W
Molecule Count 2
CDS Count 3,947
Refseq Category representative genome
Seq Rel Date 2011/01/20
Spanned Gaps 0
Species Taxid 128
SSU Count 3
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 575540
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None