Liberibacter solanacearum
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Liberibacter; s__Liberibacter solanacearum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Liberibacter; s__Candidatus Liberibacter solanacearum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Liberibacter; s__Candidatus Liberibacter solanacearum; x__Candidatus Liberibacter solanacearum CLso-ZC1
NCBI Strain Identifiers CLso-ZC1
GTDB Type Material Designation not type material
GTDB Representative of Species True (8 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.56%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 19
Contig Count 1
N50 Contigs 1,258,278 bp
Longest Contig 1,258,278 bp
Scaffold Count 1
N50 Scaffolds 1,258,278 bp
Longest Scaffold 1,258,278 bp
Genome Size 1,258,278 bp
Protein Count 1,134
Coding Density 80.20%
GC Percentage 35.24%
Ambiguous Bases 1
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM18366v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02604277
Country USA: Dalhart; Texas
Date 2010-12-3
Genbank Assembly Accession GCA_000183665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source zebra chip-infected potato field
Latitude Longitude None
Molecule Count 1
CDS Count 1,111
Refseq Category na
Seq Rel Date 2010/12/03
Spanned Gaps 0
Species Taxid 556287
SSU Count 3
Submitter USDA, ARS
Taxid 658172
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None