Calditerrivibrio nitroreducens
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Deferribacterota; c__Deferribacteres; o__Deferribacterales; f__Calditerrivibrionaceae; g__Calditerrivibrio; s__Calditerrivibrio nitroreducens
Filtered NCBI Taxonomy d__Bacteria; p__Deferribacteres; c__Deferribacteres; o__Deferribacterales; f__Deferribacteraceae; g__Calditerrivibrio; s__Calditerrivibrio nitroreducens
Unfiltered NCBI Taxonomy d__Bacteria; p__Deferribacteres; c__Deferribacteres; o__Deferribacterales; f__Deferribacteraceae; g__Calditerrivibrio; s__Calditerrivibrio nitroreducens; x__Calditerrivibrio nitroreducens DSM 19672
NCBI Strain Identifiers DSM 19672
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 0.88%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 2
N50 Contigs 2,157,835 bp
Longest Contig 2,157,835 bp
Scaffold Count 2
N50 Scaffolds 2,157,835 bp
Longest Scaffold 2,157,835 bp
Genome Size 2,216,552 bp
Protein Count 2,129
Coding Density 93.71%
GC Percentage 35.63%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM18340v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00102793
Country Japan: Nagano; Yumata
Date 2010-11-30
Genbank Assembly Accession GCA_000183405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source terrestrial hot spring
Latitude Longitude 36.829513 N 138.217163 E
Molecule Count 2
CDS Count 2,114
Refseq Category representative genome
Seq Rel Date 2010/11/30
Spanned Gaps 0
Species Taxid 477976
SSU Count 2
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 768670
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None