Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O83:H1; x__Escherichia coli O83:H1 str. NRG 857C
NCBI Strain Identifiers NRG 857C
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 2
N50 Contigs 4,747,819 bp
Longest Contig 4,747,819 bp
Scaffold Count 2
N50 Scaffolds 4,747,819 bp
Longest Scaffold 4,747,819 bp
Genome Size 4,894,879 bp
Protein Count 4,543
Coding Density 87.99%
GC Percentage 50.69%
Ambiguous Bases 4
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM18334v1
Assembly Type n/a
Bioproject PRJNA161987
Biosample SAMN02603727
Country None
Date 2010-11-30
Genbank Assembly Accession GCA_000183345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 2
CDS Count 4,578
Refseq Category reference genome
Seq Rel Date 2010/11/30
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter Public Health Agency of Canada Laboratory for Foodborne Zoonoses
Taxid 685038
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None