Vibrio mediterranei
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio mediterranei
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio mediterranei
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio mediterranei; x__Vibrio shilonii AK1
NCBI Strain Identifiers AK1
GTDB Type Material Designation type strain of heterotypic synonym
GTDB Representative of Species True (10 genomes in species cluster)
Genome Characteristics
CheckM Completeness 93.7%
CheckM Contamination 2.41%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 6
23S Count 8
tRNA Count 18
Contig Count 158
N50 Contigs 95,350 bp
Longest Contig 404,014 bp
Scaffold Count 158
N50 Scaffolds 95,350 bp
Longest Scaffold 404,014 bp
Genome Size 5,701,826 bp
Protein Count 5,329
Coding Density 88.18%
GC Percentage 43.98%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM18153v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436099
Country None
Date 2007-06-14
Genbank Assembly Accession GCA_000181535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,203
Refseq Category na
Seq Rel Date 2007/06/14
Spanned Gaps 0
Species Taxid 689
SSU Count 6
Submitter The Gordon and Betty Moore Foundation Microbial Genome Sequencing project
Taxid 391591
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ABCH00000000.1