NaphS2 sp000179315
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Desulfobacterota; c__Desulfobacteria; o__Desulfatiglandales; f__NaphS2; g__NaphS2; s__NaphS2 sp000179315
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Deltaproteobacteria; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Deltaproteobacteria; x__unclassified Deltaproteobacteria; x__unclassified Deltaproteobacteria (miscellaneous); s__delta proteobacterium NaphS2
NCBI Strain Identifiers NaphS2
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 94.52%
CheckM Contamination 2.39%
CheckM Strain Heterogeneity 22.22
5S Count 2
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 810
N50 Contigs 38,849 bp
Longest Contig 162,883 bp
Scaffold Count 810
N50 Scaffolds 38,849 bp
Longest Scaffold 162,883 bp
Genome Size 6,554,722 bp
Protein Count 6,866
Coding Density 87.79%
GC Percentage 49.83%
Ambiguous Bases 214
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM17931v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436561
Country None
Date 2010-07-12
Genbank Assembly Accession GCA_000179315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,873
Refseq Category na
Seq Rel Date 2010/07/12
Spanned Gaps 0
Species Taxid 88274
SSU Count 3
Submitter University of Massachusetts
Taxid 88274
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADZZ00000000.1