Escherichia dysenteriae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. EC4009
NCBI Strain Identifiers EC4009
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 277
N50 Contigs 105,495 bp
Longest Contig 440,558 bp
Scaffold Count 277
N50 Scaffolds 105,495 bp
Longest Scaffold 440,558 bp
Genome Size 5,194,891 bp
Protein Count 5,081
Coding Density 87.65%
GC Percentage 50.22%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM17831v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470601
Country USA: NE
Date 2010-05-10
Genbank Assembly Accession GCA_000178315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,507
Refseq Category na
Seq Rel Date 2010/05/10
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter National Bioforensic Analysis Center
Taxid 702430
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADMX00000000.1