Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis SUMu005
NCBI Strain Identifiers SUMu005
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 177
N50 Contigs 60,803 bp
Longest Contig 197,108 bp
Scaffold Count 55
N50 Scaffolds 494,897 bp
Longest Scaffold 799,574 bp
Genome Size 4,376,086 bp
Protein Count 4,205
Coding Density 88.36%
GC Percentage 65.35%
Ambiguous Bases 2
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM17783v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02595384
Country None
Date 2010-11-30
Genbank Assembly Accession GCA_000177835.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,362
Refseq Category na
Seq Rel Date 2010/11/30
Spanned Gaps 122
Species Taxid 1773
SSU Count 1
Submitter Broad Institute
Taxid 675516
Total Gap Length 44427
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADHU00000000.1