Rhodopseudomonas palustris_G
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Rhodopseudomonas; s__Rhodopseudomonas palustris_G
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Rhodopseudomonas; s__Rhodopseudomonas palustris
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Rhodopseudomonas; s__Rhodopseudomonas palustris; x__Rhodopseudomonas palustris DX-1
NCBI Strain Identifiers DX-1
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 5,404,117 bp
Longest Contig 5,404,117 bp
Scaffold Count 1
N50 Scaffolds 5,404,117 bp
Longest Scaffold 5,404,117 bp
Genome Size 5,404,117 bp
Protein Count 4,974
Coding Density 87.00%
GC Percentage 65.44%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM17725v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00713571
Country None
Date 2010-12-29
Genbank Assembly Accession GCA_000177255.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,949
Refseq Category na
Seq Rel Date 2010/12/29
Spanned Gaps 0
Species Taxid 1076
SSU Count 2
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 652103
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None