Vibrio alginolyticus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio alginolyticus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio alginolyticus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio alginolyticus; x__Vibrio alginolyticus 40B
NCBI Strain Identifiers 40B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000354175.2)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 66.67
5S Count 9
16S Count 11
23S Count 15
tRNA Count 20
Contig Count 188
N50 Contigs 64,497 bp
Longest Contig 187,248 bp
Scaffold Count 188
N50 Scaffolds 64,497 bp
Longest Scaffold 187,248 bp
Genome Size 5,144,683 bp
Protein Count 4,918
Coding Density 86.03%
GC Percentage 44.59%
Ambiguous Bases 171
GTDB representative GCA_000354175.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM17605v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470249
Country None
Date 2009-11-23
Genbank Assembly Accession GCA_000176055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,869
Refseq Category na
Seq Rel Date 2009/11/23
Spanned Gaps 0
Species Taxid 663
SSU Count 14
Submitter LNCC/UFRJ/CBS
Taxid 674977
Total Gap Length 0
Translation Table 11
tRNA Count (total) 114
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACZB00000000.1