Alicyclobacillus acidocaldarius_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Alicyclobacillia; o__Alicyclobacillales; f__Alicyclobacillaceae; g__Alicyclobacillus; s__Alicyclobacillus acidocaldarius_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Alicyclobacillaceae; g__Alicyclobacillus; s__Alicyclobacillus acidocaldarius
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Alicyclobacillaceae; g__Alicyclobacillus; s__Alicyclobacillus acidocaldarius; x__Alicyclobacillus acidocaldarius LAA1
NCBI Strain Identifiers LAA1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 94.86%
CheckM Contamination 0.42%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 3
23S Count 6
tRNA Count 20
Contig Count 59
N50 Contigs 75,048 bp
Longest Contig 241,777 bp
Scaffold Count 58
N50 Scaffolds 75,048 bp
Longest Scaffold 241,777 bp
Genome Size 2,943,284 bp
Protein Count 3,040
Coding Density 88.42%
GC Percentage 61.70%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM17383v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441801
Country None
Date 2008-12-17
Genbank Assembly Accession GCA_000173835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,948
Refseq Category na
Seq Rel Date 2008/12/17
Spanned Gaps 1
Species Taxid 405212
SSU Count 3
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 543302
Total Gap Length 10
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACCS00000000.1