Hungateiclostridium thermocellum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Acetivibrionales; f__Acetivibrionaceae; g__Hungateiclostridium; s__Hungateiclostridium thermocellum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Hungateiclostridiaceae; g__Hungateiclostridium; s__Hungateiclostridium thermocellum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Hungateiclostridiaceae; g__Hungateiclostridium; s__Hungateiclostridium thermocellum; x__Hungateiclostridium thermocellum JW20
NCBI Strain Identifiers JW20
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000015865.1)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 21
N50 Contigs 2,281,470 bp
Longest Contig 2,281,470 bp
Scaffold Count 21
N50 Scaffolds 2,281,470 bp
Longest Scaffold 2,281,470 bp
Genome Size 3,767,546 bp
Protein Count 3,320
Coding Density 84.44%
GC Percentage 39.05%
Ambiguous Bases 13
GTDB representative GCA_000015865.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM17301v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441805
Country USA: Louisiana
Date 2009-12-18
Genbank Assembly Accession GCA_000173015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cotton bale
Latitude Longitude None
Molecule Count N/A
CDS Count 3,227
Refseq Category na
Seq Rel Date 2009/12/18
Spanned Gaps 0
Species Taxid 1515
SSU Count 4
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 492476
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ABVG00000000.2