Mycobacterium intracellulare
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium intracellulare
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium intracellulare
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium avium complex (MAC); s__Mycobacterium intracellulare; x__Mycobacterium intracellulare ATCC 13950
NCBI Strain Identifiers ATCC 13950
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000277125.1)
Genome Characteristics
CheckM Completeness 98.52%
CheckM Contamination 0.24%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 353
N50 Contigs 31,468 bp
Longest Contig 248,868 bp
Scaffold Count 353
N50 Scaffolds 31,468 bp
Longest Scaffold 248,868 bp
Genome Size 5,328,562 bp
Protein Count 5,284
Coding Density 91.59%
GC Percentage 67.98%
Ambiguous Bases N/A
GTDB representative GCA_000277125.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM17211v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470538
Country None
Date 2007-12-10
Genbank Assembly Accession GCA_000172115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source human lymph node
Latitude Longitude None
Molecule Count N/A
CDS Count 5,223
Refseq Category na
Seq Rel Date 2007/12/10
Spanned Gaps 0
Species Taxid 1767
SSU Count 1
Submitter McGill University
Taxid 487521
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ABIN00000000.1