Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. EC869
NCBI Strain Identifiers EC869
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.73%
CheckM Strain Heterogeneity 60.0
5S Count 8
16S Count 10
23S Count 10
tRNA Count 19
Contig Count 147
N50 Contigs 181,491 bp
Longest Contig 514,896 bp
Scaffold Count 147
N50 Scaffolds 181,491 bp
Longest Scaffold 514,896 bp
Genome Size 5,731,065 bp
Protein Count 5,651
Coding Density 87.41%
GC Percentage 50.54%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM17203v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436283
Country None
Date 2007-11-08
Genbank Assembly Accession GCA_000172035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,132
Refseq Category na
Seq Rel Date 2007/11/08
Spanned Gaps 0
Species Taxid 562
SSU Count 10
Submitter J. Craig Venter Institute
Taxid 478008
Total Gap Length 0
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ABHU00000000.1