Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae MZO-3
NCBI Strain Identifiers MZO-3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 77
N50 Contigs 216,755 bp
Longest Contig 609,414 bp
Scaffold Count 45
N50 Scaffolds 1,096,293 bp
Longest Scaffold 1,403,656 bp
Genome Size 4,137,330 bp
Protein Count 3,733
Coding Density 86.02%
GC Percentage 47.42%
Ambiguous Bases 1
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16893v3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435869
Country None
Date 2015-7-23
Genbank Assembly Accession GCA_000168935.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,945
Refseq Category na
Seq Rel Date 2015/07/23
Spanned Gaps 32
Species Taxid 666
SSU Count 9
Submitter Broad Institute
Taxid 412883
Total Gap Length 17687
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AAUU00000000.2