Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 101-1
NCBI Strain Identifiers 101-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.73%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 14.29
5S Count 7
16S Count 7
23S Count 8
tRNA Count 20
Contig Count 91
N50 Contigs 153,834 bp
Longest Contig 454,913 bp
Scaffold Count 91
N50 Scaffolds 153,834 bp
Longest Scaffold 454,913 bp
Genome Size 4,979,767 bp
Protein Count 4,871
Coding Density 87.27%
GC Percentage 50.63%
Ambiguous Bases 44
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM16809v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02435838
Country None
Date 2008-07-24
Genbank Assembly Accession GCA_000168095.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,270
Refseq Category na
Seq Rel Date 2008/07/24
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter TIGR
Taxid 358709
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AAMK00000000.2