Clostridioides difficile
Isolate HQ 16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile NAP07
NCBI Strain Identifiers NAP07
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 97.55%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 17
Contig Count 100
N50 Contigs 85,540 bp
Longest Contig 269,252 bp
Scaffold Count 33
N50 Scaffolds 525,841 bp
Longest Scaffold 705,359 bp
Genome Size 3,905,466 bp
Protein Count 3,472
Coding Density 82.02%
GC Percentage 28.31%
Ambiguous Bases 1
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16465v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00001465
Country None
Date 2010-5-26
Genbank Assembly Accession GCA_000164655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 3,547
Refseq Category na
Seq Rel Date 2010/05/26
Spanned Gaps 67
Species Taxid 1496
SSU Count 1
Submitter BCM
Taxid 525258
Total Gap Length 43408
Translation Table 11
tRNA Count (total) 32
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADVM00000000.1