Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli MS 196-1
NCBI Strain Identifiers MS 196-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 785
N50 Contigs 15,767 bp
Longest Contig 74,778 bp
Scaffold Count 311
N50 Scaffolds 85,686 bp
Longest Scaffold 184,160 bp
Genome Size 5,253,182 bp
Protein Count 5,112
Coding Density 86.15%
GC Percentage 50.66%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16455v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00189177
Country None
Date 2010-5-26
Genbank Assembly Accession GCA_000164555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 5,564
Refseq Category na
Seq Rel Date 2010/05/26
Spanned Gaps 474
Species Taxid 562
SSU Count 1
Submitter Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine
Taxid 749548
Total Gap Length 38544
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADUD00000000.1