Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli MS 175-1
NCBI Strain Identifiers MS 175-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 413
N50 Contigs 19,227 bp
Longest Contig 79,565 bp
Scaffold Count 139
N50 Scaffolds 83,097 bp
Longest Scaffold 205,701 bp
Genome Size 4,696,414 bp
Protein Count 4,382
Coding Density 87.23%
GC Percentage 50.70%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16451v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00189173
Country None
Date 2010-05-26
Genbank Assembly Accession GCA_000164515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 4,741
Refseq Category na
Seq Rel Date 2010/05/26
Spanned Gaps 274
Species Taxid 562
SSU Count 1
Submitter Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine
Taxid 749544
Total Gap Length 23126
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADUB00000000.1