Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli FVEC1412
NCBI Strain Identifiers FVEC1412
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 137
N50 Contigs 107,387 bp
Longest Contig 337,862 bp
Scaffold Count 49
N50 Scaffolds 718,502 bp
Longest Scaffold 1,512,037 bp
Genome Size 5,234,178 bp
Protein Count 4,986
Coding Density 86.61%
GC Percentage 50.70%
Ambiguous Bases 4
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16323v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02595360
Country None
Date 2010-3-23
Genbank Assembly Accession GCA_000163235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,411
Refseq Category na
Seq Rel Date 2010/03/23
Spanned Gaps 88
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 656380
Total Gap Length 39575
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACXI00000000.1