Lactobacillus crispatus
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus crispatus; x__Lactobacillus crispatus MV-3A-US
NCBI Strain Identifiers MV-3A-US
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002088015.1)
Genome Characteristics
CheckM Completeness 98.38%
CheckM Contamination 0.74%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 220
N50 Contigs 22,669 bp
Longest Contig 85,447 bp
Scaffold Count 76
N50 Scaffolds 208,681 bp
Longest Scaffold 374,877 bp
Genome Size 2,437,083 bp
Protein Count 2,437
Coding Density 82.63%
GC Percentage 36.73%
Ambiguous Bases 1
GTDB representative GCA_002088015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16231v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463743
Country None
Date 2009-10-5
Genbank Assembly Accession GCA_000162315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,359
Refseq Category na
Seq Rel Date 2009/10/05
Spanned Gaps 144
Species Taxid 47770
SSU Count 1
Submitter Broad Institute
Taxid 575597
Total Gap Length 151870
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACQC00000000.1