Bacteroides fragilis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides fragilis
NCBI Strain Identifiers 2_1_16
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000025985.1)
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 1.02%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 64
N50 Contigs 157,290 bp
Longest Contig 332,517 bp
Scaffold Count 18
N50 Scaffolds 1,116,014 bp
Longest Scaffold 2,152,962 bp
Genome Size 5,236,303 bp
Protein Count 4,418
Coding Density 89.10%
GC Percentage 43.20%
Ambiguous Bases N/A
GTDB representative GCA_000025985.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM16213v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463733
Country None
Date 2009-11-06
Genbank Assembly Accession GCA_000162135.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 4,613
Refseq Category na
Seq Rel Date 2009/11/06
Spanned Gaps 46
Species Taxid 817
SSU Count 3
Submitter Broad Institute
Taxid 817
Total Gap Length 26606
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACPP00000000.1