Bacteroides thetaiotaomicron
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides thetaiotaomicron
NCBI Strain Identifiers 1_1_6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000011065.1)
Genome Characteristics
CheckM Completeness 99.41%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 97
N50 Contigs 116,440 bp
Longest Contig 360,329 bp
Scaffold Count 15
N50 Scaffolds 1,201,016 bp
Longest Scaffold 1,327,443 bp
Genome Size 6,760,735 bp
Protein Count 5,469
Coding Density 89.27%
GC Percentage 43.02%
Ambiguous Bases N/A
GTDB representative GCA_000011065.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Bact_sp_1_1_6_V2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463690
Country None
Date 2012-04-11
Genbank Assembly Accession GCA_000159875.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 5,567
Refseq Category na
Seq Rel Date 2012/04/11
Spanned Gaps 82
Species Taxid 818
SSU Count 1
Submitter Broad Institute
Taxid 818
Total Gap Length 8200
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACIC00000000.2