Limosilactobacillus fermentum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus fermentum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum; x__Lactobacillus fermentum ATCC 14931
NCBI Strain Identifiers ATCC 14931
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (64 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.63%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 145
N50 Contigs 37,092 bp
Longest Contig 100,459 bp
Scaffold Count 74
N50 Scaffolds 219,560 bp
Longest Scaffold 342,590 bp
Genome Size 1,867,005 bp
Protein Count 1,795
Coding Density 83.25%
GC Percentage 52.78%
Ambiguous Bases 1
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM15921v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00001473
Country None
Date 2009-5-28
Genbank Assembly Accession GCA_000159215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 1,779
Refseq Category na
Seq Rel Date 2009/05/28
Spanned Gaps 71
Species Taxid 1613
SSU Count 2
Submitter Baylor College of Medicine
Taxid 525325
Total Gap Length 70056
Translation Table 11
tRNA Count (total) 56
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ACGI00000000.1