Helicobacter_A rappini
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_A; s__Helicobacter_A rappini
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter bilis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter bilis; x__Helicobacter bilis ATCC 43879
NCBI Strain Identifiers ATCC 43879
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900198625.1)
Genome Characteristics
CheckM Completeness 96.82%
CheckM Contamination 0.7%
CheckM Strain Heterogeneity 20.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 77
N50 Contigs 88,405 bp
Longest Contig 215,413 bp
Scaffold Count 9
N50 Scaffolds 728,840 bp
Longest Scaffold 1,014,704 bp
Genome Size 2,530,521 bp
Protein Count 2,354
Coding Density 83.69%
GC Percentage 34.79%
Ambiguous Bases N/A
GTDB representative GCA_900198625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Heli_bilis_ATCC43879_V2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463714
Country None
Date 2013-9-30
Genbank Assembly Accession GCA_000158435.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,350
Refseq Category na
Seq Rel Date 2013/09/30
Spanned Gaps 68
Species Taxid 37372
SSU Count 1
Submitter Broad Institute
Taxid 613026
Total Gap Length 6800
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACDN00000000.2