Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 3_2_53FAA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 104
N50 Contigs 213,698 bp
Longest Contig 541,519 bp
Scaffold Count 12
N50 Scaffolds 953,648 bp
Longest Scaffold 2,543,925 bp
Genome Size 5,153,453 bp
Protein Count 4,890
Coding Density 86.65%
GC Percentage 50.55%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Escherichia_sp_3_2_53FAA_V2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463704
Country None
Date 2015-07-15
Genbank Assembly Accession GCA_000157115.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 5,372
Refseq Category na
Seq Rel Date 2015/07/15
Spanned Gaps 92
Species Taxid 562
SSU Count 1
Submitter Broad Institute
Taxid 562
Total Gap Length 9200
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ACAC00000000.2