Citrobacter portucalensis_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter portucalensis_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter youngae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter youngae; x__Citrobacter youngae ATCC 29220
NCBI Strain Identifiers ATCC 29220
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 49
N50 Contigs 497,106 bp
Longest Contig 867,035 bp
Scaffold Count 10
N50 Scaffolds 2,724,488 bp
Longest Scaffold 2,724,488 bp
Genome Size 5,154,159 bp
Protein Count 4,724
Coding Density 88.28%
GC Percentage 52.69%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM15597v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02415622
Country None
Date 2010-1-8
Genbank Assembly Accession GCA_000155975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 4,847
Refseq Category na
Seq Rel Date 2010/01/08
Spanned Gaps 39
Species Taxid 133448
SSU Count 3
Submitter Washington University Genome Sequencing Center
Taxid 500640
Total Gap Length 3900
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ABWL00000000.2