Helicobacter_C cinaedi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_C; s__Helicobacter_C cinaedi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter cinaedi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter cinaedi; x__Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
NCBI Strain Identifiers CCUG 18818
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (34 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 95
N50 Contigs 111,378 bp
Longest Contig 309,071 bp
Scaffold Count 50
N50 Scaffolds 705,796 bp
Longest Scaffold 846,434 bp
Genome Size 2,214,470 bp
Protein Count 2,296
Coding Density 88.78%
GC Percentage 38.46%
Ambiguous Bases 6
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM15547v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463680
Country None
Date 2008-8-28
Genbank Assembly Accession GCA_000155475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,274
Refseq Category na
Seq Rel Date 2008/08/28
Spanned Gaps 46
Species Taxid 213
SSU Count 1
Submitter Broad Institute
Taxid 537971
Total Gap Length 31761
Translation Table 11
tRNA Count (total) 37
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ABQT00000000.1