Shewanella oneidensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Shewanellaceae; g__Shewanella; s__Shewanella oneidensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Shewanellaceae; g__Shewanella; s__Shewanella oneidensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Shewanellaceae; g__Shewanella; s__Shewanella oneidensis; x__Shewanella oneidensis MR-1
NCBI Strain Identifiers MR-1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 2
N50 Contigs 4,969,811 bp
Longest Contig 4,969,811 bp
Scaffold Count 2
N50 Scaffolds 4,969,811 bp
Longest Scaffold 4,969,811 bp
Genome Size 5,131,424 bp
Protein Count 4,595
Coding Density 85.00%
GC Percentage 45.89%
Ambiguous Bases 8
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM14616v2
Assembly Type n/a
Bioproject PRJNA57949
Biosample SAMN02604014
Country None
Date 2012-11-2
Genbank Assembly Accession GCA_000146165.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 2
CDS Count 4,266
Refseq Category reference genome
Seq Rel Date 2012/11/02
Spanned Gaps 0
Species Taxid 70863
SSU Count 9
Submitter TIGR
Taxid 211586
Total Gap Length 0
Translation Table 11
tRNA Count (total) 102
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None