Saccharopolyspora erythraea
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Pseudonocardiaceae; g__Saccharopolyspora; s__Saccharopolyspora erythraea
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Saccharopolyspora; s__Saccharopolyspora erythraea
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Saccharopolyspora; s__Saccharopolyspora erythraea; x__Saccharopolyspora erythraea NRRL 2338
NCBI Strain Identifiers NRRL 2338
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.95%
CheckM Strain Heterogeneity 18.18
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 1
N50 Contigs 8,212,805 bp
Longest Contig 8,212,805 bp
Scaffold Count 1
N50 Scaffolds 8,212,805 bp
Longest Scaffold 8,212,805 bp
Genome Size 8,212,805 bp
Protein Count 7,279
Coding Density 86.37%
GC Percentage 71.15%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM6288v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272514
Country None
Date 2007-3-21
Genbank Assembly Accession GCA_000062885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 7,182
Refseq Category representative genome
Seq Rel Date 2007/03/21
Spanned Gaps 0
Species Taxid 1836
SSU Count 4
Submitter Department of Biochemistry, University of Cambridge
Taxid 405948
Total Gap Length 0
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None