Pectobacterium parmentieri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pectobacterium; s__Pectobacterium parmentieri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium parmentieri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Pectobacterium; s__Pectobacterium parmentieri; x__Pectobacterium parmentieri WPP163
NCBI Strain Identifiers WPP163
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001742145.1)
Genome Characteristics
CheckM Completeness 99.96%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 1
N50 Contigs 5,063,892 bp
Longest Contig 5,063,892 bp
Scaffold Count 1
N50 Scaffolds 5,063,892 bp
Longest Scaffold 5,063,892 bp
Genome Size 5,063,892 bp
Protein Count 4,518
Coding Density 85.26%
GC Percentage 50.48%
Ambiguous Bases N/A
GTDB representative GCA_001742145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM2464v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02598479
Country None
Date 2009-10-20
Genbank Assembly Accession GCA_000024645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,584
Refseq Category na
Seq Rel Date 2009/10/20
Spanned Gaps 0
Species Taxid 1905730
SSU Count 7
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 561231
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None