Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Cyanobacteria; c__Cyanobacteriia; o__Cyanobacteriales; f__Microcystaceae; g__Rippkaea; s__Rippkaea orientalis
Filtered NCBI Taxonomy d__Bacteria; p__Cyanobacteria; c__; o__Chroococcales; f__Aphanothecaceae; g__Rippkaea; s__Rippkaea orientalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; x__Cyanobacteria/Melainabacteria group; p__Cyanobacteria; x__Oscillatoriophycideae; o__Chroococcales; f__Aphanothecaceae; g__Rippkaea; s__Rippkaea orientalis; x__Rippkaea orientalis PCC 8801
NCBI Strain Identifiers PCC 8801
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 4
N50 Contigs 4,679,413 bp
Longest Contig 4,679,413 bp
Scaffold Count 4
N50 Scaffolds 4,679,413 bp
Longest Scaffold 4,679,413 bp
Genome Size 4,787,694 bp
Protein Count 4,540
Coding Density 85.97%
GC Percentage 39.76%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM2180v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00000280
Country None
Date 2008-12-17
Genbank Assembly Accession GCA_000021805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 4
CDS Count 4,452
Refseq Category na
Seq Rel Date 2008/12/17
Spanned Gaps 0
Species Taxid 2546366
SSU Count 2
Submitter US DOE Joint Genome Institute (JGI-PGF)
Taxid 41431
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None