Saccharophagus degradans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Cellvibrionaceae; g__Saccharophagus; s__Saccharophagus degradans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Cellvibrionaceae; g__Saccharophagus; s__Saccharophagus degradans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Cellvibrionaceae; g__Saccharophagus; s__Saccharophagus degradans; x__Saccharophagus degradans 2-40
NCBI Strain Identifiers 2-40
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.29%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 5,057,531 bp
Longest Contig 5,057,531 bp
Scaffold Count 1
N50 Scaffolds 5,057,531 bp
Longest Scaffold 5,057,531 bp
Genome Size 5,057,531 bp
Protein Count 4,143
Coding Density 87.30%
GC Percentage 45.83%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM1366v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02598483
Country None
Date 2006-3-17
Genbank Assembly Accession GCA_000013665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,182
Refseq Category representative genome
Seq Rel Date 2006/03/17
Spanned Gaps 0
Species Taxid 86304
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 203122
Total Gap Length 0
Translation Table 11
tRNA Count (total) 41
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None