Phocaeicola vulgatus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Phocaeicola; s__Phocaeicola vulgatus
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides vulgatus
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides vulgatus; x__Bacteroides vulgatus ATCC 8482
NCBI Strain Identifiers ATCC 8482
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (100 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 66.67
5S Count 8
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 1
N50 Contigs 5,163,189 bp
Longest Contig 5,163,189 bp
Scaffold Count 1
N50 Scaffolds 5,163,189 bp
Longest Scaffold 5,163,189 bp
Genome Size 5,163,189 bp
Protein Count 4,218
Coding Density 89.20%
GC Percentage 42.20%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM1282v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02604309
Country None
Date 2007-6-27
Genbank Assembly Accession GCA_000012825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,226
Refseq Category representative genome
Seq Rel Date 2007/06/27
Spanned Gaps 0
Species Taxid 821
SSU Count 7
Submitter Washington University (WashU)
Taxid 435590
Total Gap Length 0
Translation Table 11
tRNA Count (total) 83
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None