Limosilactobacillus fermentum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Limosilactobacillus; s__Limosilactobacillus fermentum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus fermentum; x__Lactobacillus fermentum IFO 3956
NCBI Strain Identifiers IFO 3956
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000159215.1)
Genome Characteristics
CheckM Completeness 99.18%
CheckM Contamination 0.82%
CheckM Strain Heterogeneity 50.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 2,098,685 bp
Longest Contig 2,098,685 bp
Scaffold Count 1
N50 Scaffolds 2,098,685 bp
Longest Scaffold 2,098,685 bp
Genome Size 2,098,685 bp
Protein Count 2,094
Coding Density 85.38%
GC Percentage 51.47%
Ambiguous Bases 1
GTDB representative GCA_000159215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM1014v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00060917
Country None
Date 2008-4-15
Genbank Assembly Accession GCA_000010145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 2,059
Refseq Category representative genome
Seq Rel Date 2008/04/15
Spanned Gaps 0
Species Taxid 1613
SSU Count 5
Submitter Kitasato Institute for Life Sciences
Taxid 334390
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None