Clostridioides difficile
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile 630
NCBI Strain Identifiers 630
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 11
23S Count 11
tRNA Count 20
Contig Count 2
N50 Contigs 4,290,252 bp
Longest Contig 4,290,252 bp
Scaffold Count 2
N50 Scaffolds 4,290,252 bp
Longest Scaffold 4,290,252 bp
Genome Size 4,298,133 bp
Protein Count 3,828
Coding Density 82.80%
GC Percentage 29.06%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM920v2
Assembly Type n/a
Bioproject PRJNA57679
Biosample SAMEA1705932
Country None
Date 2017-09-29
Genbank Assembly Accession GCA_000009205.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 2
CDS Count 3,774
Refseq Category reference genome
Seq Rel Date 2017/09/29
Spanned Gaps 0
Species Taxid 1496
SSU Count 11
Submitter Sanger Institute
Taxid 272563
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None