Ruminococcus_E sp900314795
Isolate HQ 5S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Oscillospirales; f__Acutalibacteraceae; g__Ruminococcus_E; s__Ruminococcus_E sp900314795
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; x__environmental samples; s__uncultured Clostridiales bacterium
NCBI Strain Identifiers RUG090
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.32%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 0
23S Count 0
tRNA Count 19
Contig Count 85
N50 Contigs 49,591 bp
Longest Contig 111,757 bp
Scaffold Count 79
N50 Scaffolds 49,591 bp
Longest Scaffold 111,757 bp
Genome Size 2,350,532 bp
Protein Count 2,056
Coding Density 84.36%
GC Percentage 51.46%
Ambiguous Bases 0
GTDB representative GCA_900314795.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Rumen uncultured genome RUG090
Assembly Type n/a
Bioproject PRJEB21624
Biosample SAMEA104666481
Country None
Date 2018-3-21
Genbank Assembly Accession GCA_900315275.1
Genome Category MAG
Genome Representation full
Isolate RUG090
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 0
Refseq Category na
Seq Rel Date 2018/03/21
Spanned Gaps 6
Species Taxid 172733
SSU Count 0
Submitter THE ROSLIN INSTITUTE
Taxid 172733
Total Gap Length 166
Translation Table None
tRNA Count (total) 0
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master OMYL00000000.1