Lactobacillus_F paraplantarum
Isolate HQ 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus_F; s__Lactobacillus_F paraplantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paraplantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paraplantarum
NCBI Strain Identifiers AS-7
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.38%
CheckM Contamination 3.09%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 20
Contig Count 34
N50 Contigs 140,739 bp
Longest Contig 466,393 bp
Scaffold Count 1
N50 Scaffolds 3,007,437 bp
Longest Scaffold 3,007,437 bp
Genome Size 3,007,437 bp
Protein Count 2,783
Coding Density 83.07%
GC Percentage 44.11%
Ambiguous Bases 0
GTDB representative GCF_001435655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM304568v1
Assembly Type n/a
Bioproject PRJNA445630
Biosample SAMN08794384
Country None
Date 2018-4-9
Genbank Assembly Accession GCA_003045685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
Protein Count 2,832
Refseq Category na
Seq Rel Date 2018/04/09
Spanned Gaps 34
Species Taxid 60520
SSU Count 0
Submitter Rehman Medical Institute Peshawar, Pakistan
Taxid 60520
Total Gap Length 3400
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None