Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio campbellii
NCBI Strain Identifiers LC1-863
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.33%
CheckM Contamination 0.74%
CheckM Strain Heterogeneity 20.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 16
Contig Count 82
N50 Contigs 125,866 bp
Longest Contig 321,880 bp
Scaffold Count 51
N50 Scaffolds 244,505 bp
Longest Scaffold 500,409 bp
Genome Size 5,141,893 bp
Protein Count 5,552
Coding Density 84.31%
GC Percentage 45.41%
Ambiguous Bases 0
GTDB representative GCF_002163755.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM295448v1
Assembly Type n/a
Bioproject PRJNA357119
Biosample SAMN06133337
Country None
Date 2018-2-27
Genbank Assembly Accession GCA_002954485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 4,693
Refseq Category na
Seq Rel Date 2018/02/27
Spanned Gaps 31
Species Taxid 680
SSU Count 0
Submitter Atmosphere and Ocean Research Institute, The University of Tokyo
Taxid 680
Total Gap Length 26132
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MSCD00000000.1